PACCMIT-CDS algorithm

Description

PACCMIT-CDS is a program searching for microRNA targets within coding sequences. The program is written in C++ and is distributed in source form. If you use this algorithm, please cite 

R. Marín, M. Šulc, J. Vaníček, RNA 19, 1-8 (2013).
 

Below we describe the basic usage of PACCMIT-CDS assuming a Linux-like operating system running on x86-64 architecture.

  1. download the tarball paccmit-cds.tgz
  2. decompress it by means of the command tar -xzvf paccmit-cds.tgz
  3. compile the program with the command make

For more details, see the Concise User’s manual or the full User’s Manual.